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check reverse-complement
Algorithm
FFT NCC + LLR
TomTom (complete p-values)
Rank by
NCC (cosine)
LLR (sum bits)
Scores are
normalized cross-correlation
(−1…+1) of 51-bp
log-odds
kernels. “LLR” is the
sum
of PWM log-odds over the best overlap. Switch to
TomTom
mode to run the MEME-style complete score p-value calculation.
DB:
sample
• motifs:
—
#
Motif
Len
Score
Bar
LLR (bits)
Logo
Ori
Offset
Overlap
Best overlap (query vs motif consensus)